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Histopathology

The STTARR's histopathology core now provides 100+ optimized antibodies for immunohistochemistry/immunofluorescence. The histopathology core now specializes in the special MOVAT stain (highlights the various constituents of connective tissue, especially cardiovascular tissue, by five colors in a single stained slide). The new development of an in-situ hybridization protocol combined with immunofluorescence or human X-Y chromosome assays is now a histopathology service offered at STTARR.

Hematoxylin and eosin staining on a lung tissue

Image of Hematoxylin and eosin staining on a lung tissue

Kidney tubules marker stained by IF

Image of kidney tubules marker stained by IF

CA9 IHC for hypoxia screening

Image of CA9 IHC for hypoxia screening

Movat pentachrome

Image of Movat pentachrome

Formalin fixed Paraffin embedded (FFPE) tissue services

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Formalin fixed Paraffin embedded (FFPE) tissue services

  • Grossing

    Assess sample fixation, trimming harvest tissue to the plane of interest.

  • Tissue processing & embedding (regular and wholemount)

    Regular cassette size – 30mm x 35mm.
    Supersize cassette size – 65mm x 50mm.

  • Re-embedding

    Melt down paraffin block and re-orient the tissue into the desired cutting plane.

Frozen tissue services

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Frozen tissue services

  • Cryo block sectioning

    Sectioning OCT frozen tissue blocks prepared by users.

  • Regular tissue specimen Freezing

    User provide fresh harvested tissue to STTARR Histopathology for snap freezing in OCT.

  • Muscle Specimen Freezing

    Special snap freezing technique for muscle tissue prone to freeze artifact.

Microtomy

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Microtomy

  • Microtomy

    Sectioning paraffin and frozen section at routine 4um thickness or in special thickness requested by user.

  • Paraffin Microtomy

    Regular slides – 25mm x 75mm.
    Wholemount large slides – 50mm x 75mm.

  • Serial sections

    Paraffin or frozen (per slide) consecutive sections from a ribbon of section mounted on slides labelled with numbers.

  • Specific micro-structure/Precise sectioning

    Look for specific microscopic structures in paraffin/frozen blocks and take sections eg. Mouse aortic arch, aortic root, mouse embryo thyroid glands.

Immunohistochemistry

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Immunohistochemistry

  • IHC New Antibody Optimization

    Optimization of commercial and/or in house produced antibodies.

  • Immunohistochemistry

    Check out our Histopathology Optimized Antibody List for a list of antibodies currently available and optimized at STTARR Histopathology. Please note that the list is continuously updated. If the antibody you are interested in is not on the list, please contact us.

  • New service

    We also offer validated antibodies for immunohistochemistry staining on porcine tissue.

  • Multiplex IF staining

    Multiplex of up to 3 target proteins in cells/tissues using fluorescent tagged antibodies.

  • Tunel assay

    Detection of DNA fragmentation in last phase of apoptosis (cell death).

In situ hybridization

+

In situ hybridization

  • In Situ Hybridization (RNAscope)

    Utilizing ACDBio System probes and detection systems to detect target mRNA in paraffin embedded sections.

Special Stains

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Special Stains

  • Special Stains & Enzyme Histochemistry

    Masson trichrome, Elastic trichrome, Picrosirius red, Periodic acid Schiff, Cresyl echt violet, Luxol fast blue, Gram stain, Von Kossa calcium, Oil O red, Gordon & Sweets Silver Reticular fiberstain, Safranin O, MOVAT, Prussian blue, Fontana Masson and fast green, TRAP (Tartrate-Resistant Acid Phosphatase).
    STTARR Histopathology has other histochemistry stain protocols that are available upon request, please inquire if the stain that you are interested is not on the list.

H&E staining

+

H&E staining

Principle and routine stain used in histopathology performed on paraffin or frozen sections.

Other Services

+

Other Services

  • Autoradiography

    Sectioning thick sections (3–50 microns) for autoradiography, 2 sets of slides each sample. Protocol on sample preparation for autoradiography available upon request.

  • Cell pellet agar embedding

    Centrifuge cell pellet and double embed into agar gel and paraffin.

  • Decalcification - acid

    Formic acid for rapid decalcification or EDTA for tissue to be used for IHC.

  • Full necropsy (mouse, rat, guinea pig)

    Harvest tissue for toxicology study or specific organ of interest.

  • Tissue microarray construction

    Combining multiple donor tissue paraffin blocks into one for high throughput IHC staining.

The STTARR's histopathology core now provides 100+ optimized antibodies for immunohistochemistry/immunofluorescence. The histopathology core now specializes in the special MOVAT stain (highlights the various constituents of connective tissue, especially cardiovascular tissue, by five colors in a single stained slide). The new development of an in-situ hybridization protocol combined with immunofluorescence or human X-Y chromosome assays is now a histopathology service offered at STTARR.

Hematoxylin and eosin staining on a lung tissue

Image of Hematoxylin and eosin staining on a lung tissue

Kidney tubules marker stained by IF

Image of kidney tubules marker stained by IF

CA9 IHC for hypoxia screening

Image of CA9 IHC for hypoxia screening

Movat pentachrome

Image of Movat pentachrome

Formalin fixed Paraffin embedded (FFPE) tissue services

+

Formalin fixed Paraffin embedded (FFPE) tissue services

  • Grossing

    Assess sample fixation, trimming harvest tissue to the plane of interest.

  • Tissue processing & embedding (regular and wholemount)

    Regular cassette size – 30mm x 35mm.
    Supersize cassette size – 65mm x 50mm.

  • Re-embedding

    Melt down paraffin block and re-orient the tissue into the desired cutting plane.

Frozen tissue services

+

Frozen tissue services

  • Cryo block sectioning

    Sectioning OCT frozen tissue blocks prepared by users.

  • Regular tissue specimen Freezing

    User provide fresh harvested tissue to STTARR Histopathology for snap freezing in OCT.

  • Muscle Specimen Freezing

    Special snap freezing technique for muscle tissue prone to freeze artifact.

Microtomy

+

Microtomy

  • Microtomy

    Sectioning paraffin and frozen section at routine 4um thickness or in special thickness requested by user.

  • Paraffin Microtomy

    Regular slides – 25mm x 75mm.
    Wholemount large slides – 50mm x 75mm.

  • Serial sections

    Paraffin or frozen (per slide) consecutive sections from a ribbon of section mounted on slides labelled with numbers.

  • Specific micro-structure/Precise sectioning

    Look for specific microscopic structures in paraffin/frozen blocks and take sections eg. Mouse aortic arch, aortic root, mouse embryo thyroid glands.

Immunohistochemistry

+

Immunohistochemistry

  • IHC New Antibody Optimization

    Optimization of commercial and/or in house produced antibodies.

  • Immunohistochemistry

    Check out our Histopathology Optimized Antibody List for a list of antibodies currently available and optimized at STTARR Histopathology. Please note that the list is continuously updated. If the antibody you are interested in is not on the list, please contact us.

  • New service

    We also offer validated antibodies for immunohistochemistry staining on porcine tissue.

  • Multiplex IF staining

    Multiplex of up to 3 target proteins in cells/tissues using fluorescent tagged antibodies.

  • Tunel assay

    Detection of DNA fragmentation in last phase of apoptosis (cell death).

In situ hybridization

+

In situ hybridization

  • In Situ Hybridization (RNAscope)

    Utilizing ACDBio System probes and detection systems to detect target mRNA in paraffin embedded sections.

Special Stains

+

Special Stains

  • Special Stains & Enzyme Histochemistry

    Masson trichrome, Elastic trichrome, Picrosirius red, Periodic acid Schiff, Cresyl echt violet, Luxol fast blue, Gram stain, Von Kossa calcium, Oil O red, Gordon & Sweets Silver Reticular fiberstain, Safranin O, MOVAT, Prussian blue, Fontana Masson and fast green, TRAP (Tartrate-Resistant Acid Phosphatase).
    STTARR Histopathology has other histochemistry stain protocols that are available upon request, please inquire if the stain that you are interested is not on the list.

H&E staining

+

H&E staining

Principle and routine stain used in histopathology performed on paraffin or frozen sections.

Other Services

+

Other Services

  • Autoradiography

    Sectioning thick sections (3–50 microns) for autoradiography, 2 sets of slides each sample. Protocol on sample preparation for autoradiography available upon request.

  • Cell pellet agar embedding

    Centrifuge cell pellet and double embed into agar gel and paraffin.

  • Decalcification - acid

    Formic acid for rapid decalcification or EDTA for tissue to be used for IHC.

  • Full necropsy (mouse, rat, guinea pig)

    Harvest tissue for toxicology study or specific organ of interest.

  • Tissue microarray construction

    Combining multiple donor tissue paraffin blocks into one for high throughput IHC staining.

Services

STTARR offers services and facilities needed for translational drug development and preclinical research.
Our services include:
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Histopathology Stain Image Gallery

View a collection of newly captured histopathology stain images by clicking “Show More” below.

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KDT Dropbox/Pickup

The KDT STTARR Histopathology Dropbox is now available. Drop off any your fixed samples in the Dropbox (located in front of the KDT Directorate office, refer to attached photo for the location) and send an email over to sttarr.general@uhn.ca letting the team know about the samples. Otherwise, we are also happy to assist with transferring frozen samples via the shuttle as well. Please send an email to sttarr.general@uhn.ca to coordinate the drop-off/transfer of frozen samples/tissues.

KDT dropbox poster
Icon image of a human sitting in front of a computer

Consulting & Education

Scientific consulting & project management, workshops, user training and facility tours available

  • Our scientists provide comprehensive support throughout study conception, project management, method development, and data analysis
  • We offer workshops on molecular imaging, user training sessions and facility tours. Please contact us for personalized workshop and training opportunities

For more information on Internal and External rates, please contact us or Naz Chaudary.

Frequently Asked Questions?

Histopathology FAQ

  • We accept a variety of tissues that include entire hearts and aortic roots, long bones (femur), teeth, whole mount large tissue specimens, small anatomical structures, cell pellets, organoids, spheroids, and more.
  • You can contact us if you have questions about a specific tissue type you're not sure about.

Please complete and bring the following form when dropping off your sample:

  • Stratocore is STTARR's online resource for user training requests, booking management, account modification, and access requests. For new users, refer to the following guide to begin onboarding: STTARR Stratocore New User Onboarding Guide.
  • Once registered, visit https://ppms.us/uhn/?STTARR to browse specific histopathology services:
    1. Click "Order" at the top bar on the webpage.
      Screenshot showing the Order button on the PPMS STTARR webpage
    2. Browse the different services and their pricing under "STTAR Histopathology Quotes".
      Screenshot showing STTAR Histopathology Quotes in the order page

Team